Western Blot:Article Title: Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-BRD4 (WB and ChIP) Bethyl Lab Cat# A301-985A100; RRID: AB_2620184 Rabbit polyclonal anti-H4K5bu (WB and ELISA) PTM biolabs CatPTM-313 Rabbit polyclonal anti-H4K5bu (ChIP) PTM biolabs Cat#PTM-310 Rabbit polyclonal anti-H4K8bu (WB) PTM biolabs Cat#PTM-311 Rabbit polyclonal anti-H4K5cr (WB, ChIP and ELISA) PTM biolabs Cat#PTM-521 Rabbit polyclonal anti-H4K8cr (WB) PTM biolabs Cat#PTM-522 Rabbit polyclonal anti-H4K5ac (WB) PTM biolabs Cat#PTM-119 Rabbit polyclonal anti-H4K8ac (WB) PTM biolabs Cat#PTM-120 Rabbit polyclonal anti-H4K5bhb (WB) PTM biolabs Cat#PTM-1205 Rabbit polyclonal anti-H4K5lac (WB) PTM biolabs Cat#PTM-1407 Rabbit monoclonal anti-H4K5ac (ChIP) Abcam Cat#ab51997; RRID: AB_2264109 Rabbit polyclonal anti-HA (WB and ELISA) Abcam Cat#ab9110; RRID: AB_307019 Rabbit polyclonal anti-H4 (WB and ELISA) Abcam Cat#ab10158; RRID: AB_296888 Mouse monoclonal anti-Flag M2 (IF) Sigma-Aldrich Cat#F1804; RRID: AB_262044 Mouse monoclonal Anti-b-Actin (WB) Sigma-Aldrich Cat#A5441; RRID: AB_476744 Rabbit polyclonal H3 antibody (ELISA) Abcam Cat#ab1791; RRID: AB_302613 Goat anti-Rabbit IgG (H+L)-HRP (WB and ELISA) Bio-rad Cat#1706515, RRID: AB_2617112 Goat anti-Mouse IgG (H+L)-HRP (WB) Bio-rad Cat#170-6516; RRID: AB_11125547 Goat anti-Rabbit IgG, HRP linked antibody (ELISA) Cell Signaling Technology Cat#7074; RRID: AB_2099233 Goat anti-Mouse IgG (H+L), DyLight 405 (IF) Invitrogen Cat# 35501BID; RRID: AB_2533209 Bacterial and virus strains One shot Stbl3 Competent E. coli Invitrogen Cat#C737303 Biological samples B-ALL patients’ bone marrow samples, see Table S4 This paper N/A Chemicals, peptides, and recombinant proteins JQ-1 Emadali et al., 2013 N/A Rotenone Sigma-Aldrich Cat#R8875 Oligomycin A Sigma-Aldrich Cat#75351 Antimycin A Sigma-Aldrich Cat#A8674 FCCP Sigma-Aldrich Cat#C2920 Sodium octanoate Sigma-Aldrich Cat#C5038 Ranolazine Sigma-Aldrich Cat#R6152 Triacsin C Sigma-Aldrich Cat#T4540 ND-630 (Firsocostat) MedChemExpress Cat#HY-16901 Puromycin Sigma-Aldrich Cat#P8833 Mitotracker Red Invitrogen Cat#M7512 Micrococcal nuclease S7 Sigma-Aldrich Cat#10107921001 Lipofectamine 2000 Invitrogen Cat#11668019 Complete Mini protease inhibitors Sigma-Aldrich Cat #11836153001 (Continued on next page) e1 Cell Reports 36, 109460, July 27, 2021
Chromatin Immunoprecipitation:Article Title: Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-BRD4 (WB and ChIP) Bethyl Lab Cat# A301-985A100; RRID: AB_2620184 Rabbit polyclonal anti-H4K5bu (WB and ELISA) PTM biolabs CatPTM-313 Rabbit polyclonal anti-H4K5bu (ChIP) PTM biolabs Cat#PTM-310 Rabbit polyclonal anti-H4K8bu (WB) PTM biolabs Cat#PTM-311 Rabbit polyclonal anti-H4K5cr (WB, ChIP and ELISA) PTM biolabs Cat#PTM-521 Rabbit polyclonal anti-H4K8cr (WB) PTM biolabs Cat#PTM-522 Rabbit polyclonal anti-H4K5ac (WB) PTM biolabs Cat#PTM-119 Rabbit polyclonal anti-H4K8ac (WB) PTM biolabs Cat#PTM-120 Rabbit polyclonal anti-H4K5bhb (WB) PTM biolabs Cat#PTM-1205 Rabbit polyclonal anti-H4K5lac (WB) PTM biolabs Cat#PTM-1407 Rabbit monoclonal anti-H4K5ac (ChIP) Abcam Cat#ab51997; RRID: AB_2264109 Rabbit polyclonal anti-HA (WB and ELISA) Abcam Cat#ab9110; RRID: AB_307019 Rabbit polyclonal anti-H4 (WB and ELISA) Abcam Cat#ab10158; RRID: AB_296888 Mouse monoclonal anti-Flag M2 (IF) Sigma-Aldrich Cat#F1804; RRID: AB_262044 Mouse monoclonal Anti-b-Actin (WB) Sigma-Aldrich Cat#A5441; RRID: AB_476744 Rabbit polyclonal H3 antibody (ELISA) Abcam Cat#ab1791; RRID: AB_302613 Goat anti-Rabbit IgG (H+L)-HRP (WB and ELISA) Bio-rad Cat#1706515, RRID: AB_2617112 Goat anti-Mouse IgG (H+L)-HRP (WB) Bio-rad Cat#170-6516; RRID: AB_11125547 Goat anti-Rabbit IgG, HRP linked antibody (ELISA) Cell Signaling Technology Cat#7074; RRID: AB_2099233 Goat anti-Mouse IgG (H+L), DyLight 405 (IF) Invitrogen Cat# 35501BID; RRID: AB_2533209 Bacterial and virus strains One shot Stbl3 Competent E. coli Invitrogen Cat#C737303 Biological samples B-ALL patients’ bone marrow samples, see Table S4 This paper N/A Chemicals, peptides, and recombinant proteins JQ-1 Emadali et al., 2013 N/A Rotenone Sigma-Aldrich Cat#R8875 Oligomycin A Sigma-Aldrich Cat#75351 Antimycin A Sigma-Aldrich Cat#A8674 FCCP Sigma-Aldrich Cat#C2920 Sodium octanoate Sigma-Aldrich Cat#C5038 Ranolazine Sigma-Aldrich Cat#R6152 Triacsin C Sigma-Aldrich Cat#T4540 ND-630 (Firsocostat) MedChemExpress Cat#HY-16901 Puromycin Sigma-Aldrich Cat#P8833 Mitotracker Red Invitrogen Cat#M7512 Micrococcal nuclease S7 Sigma-Aldrich Cat#10107921001 Lipofectamine 2000 Invitrogen Cat#11668019 Complete Mini protease inhibitors Sigma-Aldrich Cat #11836153001 (Continued on next page) e1 Cell Reports 36, 109460, July 27, 2021
Enzyme-linked Immunosorbent Assay:Article Title: Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-BRD4 (WB and ChIP) Bethyl Lab Cat# A301-985A100; RRID: AB_2620184 Rabbit polyclonal anti-H4K5bu (WB and ELISA) PTM biolabs CatPTM-313 Rabbit polyclonal anti-H4K5bu (ChIP) PTM biolabs Cat#PTM-310 Rabbit polyclonal anti-H4K8bu (WB) PTM biolabs Cat#PTM-311 Rabbit polyclonal anti-H4K5cr (WB, ChIP and ELISA) PTM biolabs Cat#PTM-521 Rabbit polyclonal anti-H4K8cr (WB) PTM biolabs Cat#PTM-522 Rabbit polyclonal anti-H4K5ac (WB) PTM biolabs Cat#PTM-119 Rabbit polyclonal anti-H4K8ac (WB) PTM biolabs Cat#PTM-120 Rabbit polyclonal anti-H4K5bhb (WB) PTM biolabs Cat#PTM-1205 Rabbit polyclonal anti-H4K5lac (WB) PTM biolabs Cat#PTM-1407 Rabbit monoclonal anti-H4K5ac (ChIP) Abcam Cat#ab51997; RRID: AB_2264109 Rabbit polyclonal anti-HA (WB and ELISA) Abcam Cat#ab9110; RRID: AB_307019 Rabbit polyclonal anti-H4 (WB and ELISA) Abcam Cat#ab10158; RRID: AB_296888 Mouse monoclonal anti-Flag M2 (IF) Sigma-Aldrich Cat#F1804; RRID: AB_262044 Mouse monoclonal Anti-b-Actin (WB) Sigma-Aldrich Cat#A5441; RRID: AB_476744 Rabbit polyclonal H3 antibody (ELISA) Abcam Cat#ab1791; RRID: AB_302613 Goat anti-Rabbit IgG (H+L)-HRP (WB and ELISA) Bio-rad Cat#1706515, RRID: AB_2617112 Goat anti-Mouse IgG (H+L)-HRP (WB) Bio-rad Cat#170-6516; RRID: AB_11125547 Goat anti-Rabbit IgG, HRP linked antibody (ELISA) Cell Signaling Technology Cat#7074; RRID: AB_2099233 Goat anti-Mouse IgG (H+L), DyLight 405 (IF) Invitrogen Cat# 35501BID; RRID: AB_2533209 Bacterial and virus strains One shot Stbl3 Competent E. coli Invitrogen Cat#C737303 Biological samples B-ALL patients’ bone marrow samples, see Table S4 This paper N/A Chemicals, peptides, and recombinant proteins JQ-1 Emadali et al., 2013 N/A Rotenone Sigma-Aldrich Cat#R8875 Oligomycin A Sigma-Aldrich Cat#75351 Antimycin A Sigma-Aldrich Cat#A8674 FCCP Sigma-Aldrich Cat#C2920 Sodium octanoate Sigma-Aldrich Cat#C5038 Ranolazine Sigma-Aldrich Cat#R6152 Triacsin C Sigma-Aldrich Cat#T4540 ND-630 (Firsocostat) MedChemExpress Cat#HY-16901 Puromycin Sigma-Aldrich Cat#P8833 Mitotracker Red Invitrogen Cat#M7512 Micrococcal nuclease S7 Sigma-Aldrich Cat#10107921001 Lipofectamine 2000 Invitrogen Cat#11668019 Complete Mini protease inhibitors Sigma-Aldrich Cat #11836153001 (Continued on next page) e1 Cell Reports 36, 109460, July 27, 2021
Virus:Article Title: Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-BRD4 (WB and ChIP) Bethyl Lab Cat# A301-985A100; RRID: AB_2620184 Rabbit polyclonal anti-H4K5bu (WB and ELISA) PTM biolabs CatPTM-313 Rabbit polyclonal anti-H4K5bu (ChIP) PTM biolabs Cat#PTM-310 Rabbit polyclonal anti-H4K8bu (WB) PTM biolabs Cat#PTM-311 Rabbit polyclonal anti-H4K5cr (WB, ChIP and ELISA) PTM biolabs Cat#PTM-521 Rabbit polyclonal anti-H4K8cr (WB) PTM biolabs Cat#PTM-522 Rabbit polyclonal anti-H4K5ac (WB) PTM biolabs Cat#PTM-119 Rabbit polyclonal anti-H4K8ac (WB) PTM biolabs Cat#PTM-120 Rabbit polyclonal anti-H4K5bhb (WB) PTM biolabs Cat#PTM-1205 Rabbit polyclonal anti-H4K5lac (WB) PTM biolabs Cat#PTM-1407 Rabbit monoclonal anti-H4K5ac (ChIP) Abcam Cat#ab51997; RRID: AB_2264109 Rabbit polyclonal anti-HA (WB and ELISA) Abcam Cat#ab9110; RRID: AB_307019 Rabbit polyclonal anti-H4 (WB and ELISA) Abcam Cat#ab10158; RRID: AB_296888 Mouse monoclonal anti-Flag M2 (IF) Sigma-Aldrich Cat#F1804; RRID: AB_262044 Mouse monoclonal Anti-b-Actin (WB) Sigma-Aldrich Cat#A5441; RRID: AB_476744 Rabbit polyclonal H3 antibody (ELISA) Abcam Cat#ab1791; RRID: AB_302613 Goat anti-Rabbit IgG (H+L)-HRP (WB and ELISA) Bio-rad Cat#1706515, RRID: AB_2617112 Goat anti-Mouse IgG (H+L)-HRP (WB) Bio-rad Cat#170-6516; RRID: AB_11125547 Goat anti-Rabbit IgG, HRP linked antibody (ELISA) Cell Signaling Technology Cat#7074; RRID: AB_2099233 Goat anti-Mouse IgG (H+L), DyLight 405 (IF) Invitrogen Cat# 35501BID; RRID: AB_2533209 Bacterial and virus strains One shot Stbl3 Competent E. coli Invitrogen Cat#C737303 Biological samples B-ALL patients’ bone marrow samples, see Table S4 This paper N/A Chemicals, peptides, and recombinant proteins JQ-1 Emadali et al., 2013 N/A Rotenone Sigma-Aldrich Cat#R8875 Oligomycin A Sigma-Aldrich Cat#75351 Antimycin A Sigma-Aldrich Cat#A8674 FCCP Sigma-Aldrich Cat#C2920 Sodium octanoate Sigma-Aldrich Cat#C5038 Ranolazine Sigma-Aldrich Cat#R6152 Triacsin C Sigma-Aldrich Cat#T4540 ND-630 (Firsocostat) MedChemExpress Cat#HY-16901 Puromycin Sigma-Aldrich Cat#P8833 Mitotracker Red Invitrogen Cat#M7512 Micrococcal nuclease S7 Sigma-Aldrich Cat#10107921001 Lipofectamine 2000 Invitrogen Cat#11668019 Complete Mini protease inhibitors Sigma-Aldrich Cat #11836153001 (Continued on next page) e1 Cell Reports 36, 109460, July 27, 2021
Recombinant:Article Title: Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-BRD4 (WB and ChIP) Bethyl Lab Cat# A301-985A100; RRID: AB_2620184 Rabbit polyclonal anti-H4K5bu (WB and ELISA) PTM biolabs CatPTM-313 Rabbit polyclonal anti-H4K5bu (ChIP) PTM biolabs Cat#PTM-310 Rabbit polyclonal anti-H4K8bu (WB) PTM biolabs Cat#PTM-311 Rabbit polyclonal anti-H4K5cr (WB, ChIP and ELISA) PTM biolabs Cat#PTM-521 Rabbit polyclonal anti-H4K8cr (WB) PTM biolabs Cat#PTM-522 Rabbit polyclonal anti-H4K5ac (WB) PTM biolabs Cat#PTM-119 Rabbit polyclonal anti-H4K8ac (WB) PTM biolabs Cat#PTM-120 Rabbit polyclonal anti-H4K5bhb (WB) PTM biolabs Cat#PTM-1205 Rabbit polyclonal anti-H4K5lac (WB) PTM biolabs Cat#PTM-1407 Rabbit monoclonal anti-H4K5ac (ChIP) Abcam Cat#ab51997; RRID: AB_2264109 Rabbit polyclonal anti-HA (WB and ELISA) Abcam Cat#ab9110; RRID: AB_307019 Rabbit polyclonal anti-H4 (WB and ELISA) Abcam Cat#ab10158; RRID: AB_296888 Mouse monoclonal anti-Flag M2 (IF) Sigma-Aldrich Cat#F1804; RRID: AB_262044 Mouse monoclonal Anti-b-Actin (WB) Sigma-Aldrich Cat#A5441; RRID: AB_476744 Rabbit polyclonal H3 antibody (ELISA) Abcam Cat#ab1791; RRID: AB_302613 Goat anti-Rabbit IgG (H+L)-HRP (WB and ELISA) Bio-rad Cat#1706515, RRID: AB_2617112 Goat anti-Mouse IgG (H+L)-HRP (WB) Bio-rad Cat#170-6516; RRID: AB_11125547 Goat anti-Rabbit IgG, HRP linked antibody (ELISA) Cell Signaling Technology Cat#7074; RRID: AB_2099233 Goat anti-Mouse IgG (H+L), DyLight 405 (IF) Invitrogen Cat# 35501BID; RRID: AB_2533209 Bacterial and virus strains One shot Stbl3 Competent E. coli Invitrogen Cat#C737303 Biological samples B-ALL patients’ bone marrow samples, see Table S4 This paper N/A Chemicals, peptides, and recombinant proteins JQ-1 Emadali et al., 2013 N/A Rotenone Sigma-Aldrich Cat#R8875 Oligomycin A Sigma-Aldrich Cat#75351 Antimycin A Sigma-Aldrich Cat#A8674 FCCP Sigma-Aldrich Cat#C2920 Sodium octanoate Sigma-Aldrich Cat#C5038 Ranolazine Sigma-Aldrich Cat#R6152 Triacsin C Sigma-Aldrich Cat#T4540 ND-630 (Firsocostat) MedChemExpress Cat#HY-16901 Puromycin Sigma-Aldrich Cat#P8833 Mitotracker Red Invitrogen Cat#M7512 Micrococcal nuclease S7 Sigma-Aldrich Cat#10107921001 Lipofectamine 2000 Invitrogen Cat#11668019 Complete Mini protease inhibitors Sigma-Aldrich Cat #11836153001 (Continued on next page) e1 Cell Reports 36, 109460, July 27, 2021
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